Ronald Bradford
MySQL Expert

MySQL Expert Ronald Bradford shares valuable input in MySQL Performance Tuning, MySQL Scalability and general MySQL Help from his two decades of working with MySQL, Oracle, Ingres and development technologies.

Archive for March, 2010

Using ROLLBACK with MyISAM

Wednesday, March 31st, 2010

Using ROLLBACK with MyISAM is useless. A ROLLBACK command is used to undo any DML that occurs during a transaction (i.e. START TRANSACTION and COMMIT). The MySQL default storage engine MyISAM does not support transactions.

It is easy with the SHOW GLOBAL STATUS command to see if your application code uses ROLLBACK. By performing two samples you can look at the delta over time. The statpack utility is one product that provides a human friendly display of this delta. As seen below, the use of ROLLBACK in combination with the read/write ratio and the my.cnf –skip-innodb indicate unnecessary database work.

====================================================================================================
                    Variable    Delta/Percentage         Per Second              Total
====================================================================================================

                                         Statement Activity
====================================================================================================

                     SELECT:        1,135,589                 1,309.79              189,279,510 (49.62%)
                     INSERT:            6,171                     7.12                  431,987 (0.11%)
                     UPDATE:            4,800                     5.54                  334,620 (0.09%)
                     DELETE:              312                     0.36                   17,910 (0.00%)
                    REPLACE:                0                     0.00                        0 (0.00%)
          INSERT ... SELECT:              121                     0.14                    4,042 (0.00%)
         REPLACE ... SELECT:               11                     0.01                      109 (0.00%)
               Multi UPDATE:                0                     0.00                       30 (0.00%)
               Multi DELETE:                0                     0.00                       28 (0.00%)
                     COMMIT:                0                     0.00                        0 (0.00%)
                   ROLLBACK:        1,154,987                 1,332.16              191,382,775 (50.17%)

If the ROLLBACK command doesn’t do anything you may be tempted to consider this doesn’t do much harm, think again. In the following example of statements analyzed via TCP packets, the ROLLBACK attributed to 21% of the execution time of all SQL in this sample.

# Profile
# Rank Query ID           Response time    Calls R/Call   Item
# ==== ================== ================ ===== ======== ================
#    1 0x4ED092EFA577DAB7     0.0106 24.8%     1   0.0106 SELECT p
#    2 0xC9ECBBF2C88C2336     0.0102 23.8%    52   0.0002 SELECT r_c
#    3 0x19C8068B5C1997CD     0.0092 21.6%   138   0.0001 ROLLBACK
#    4 0x448E4AEB7E02AF72     0.0091 21.3%    52   0.0002 SELECT r_t
#    5 0x56438040F4B2B894     0.0015  3.6%     2   0.0008 SELECT h_c
#    6 0x164962ED9B451586     0.0012  2.9%     9   0.0001 SELECT r
#    7 0x8FDE1484818AAACE     0.0008  1.9%     8   0.0001 SELECT p_c

In a well tuned system, the greatest time to execute an SQL statement is not the running of the SQL inside the MySQL kernel, it is the network latency of making the call, and the time taken to return the resultset requested.

In this extreme case on a production system, 1/2 the statements executed where unnecessary.

Uncovering this issue was three commands and less then 5 minutes of my time. The statpack report uncovered 4 additional red flags at the same time.

If you are not monitoring your production system, start now. For assistance on what to monitor and analysis please contact me for more information.

Installing Ubuntu Desktop 10.04 with LVM

Saturday, March 27th, 2010

With a new quad core desktop with 8GB RAM & 1TB HDD I wanted to install the Ubuntu desktop version using LVM. This is not possible with the “Desktop CD”. You need to use the “alternative CD” which will easily allow you to configure LVM via a text/cursors installation and also give you a deskop GNOME environment. The “Server CD” also gives you LVM options, but no GUI.

While there are complicated instructions on how to configure/setup LVM with various versions of Ubuntu, all you need with Ubuntu 10.04 is the right CD.

While installing I also read up on two tips that I found of benefit.

  • During installation of the base system, package unpacking and setup messages are redirected to tty4. You can access this terminal by pressing Left Alt+F4; get back to the main installer process with Left Alt+F1.
  • You can get a terminal window easily during installation by switching to the second virtual console by pressing Left Alt+F2

Installation was rather seamless, the only annoyance the cursors interface not displaying clearly on my Dell 2407WFP monitor during the installation process. Monitor works fine with installed GUI at 1920×1200.

New linux desktop configuration

Saturday, March 27th, 2010

My purchase yesterday was a HP Pavilion p6340f Desktop PC with the following specs.

  • Intel Core 2 Quad Q8400 2.66GHz Processor
  • 4MB L2 Cache, 1333MHz FSB
  • 8GB PC3-8500 DDR3 SDRAM (4 x 2GB)
  • 1TB Serial ATA Hard Drive
  • Intel Graphics Media Accelerator X4500 with 32MB Integrated shared graphics memory
  • Lightscribe SuperMulti DVD±R/RW with Double Layer
  • 10/100/1000 Base-T Network interface
  • Wireless LAN 802.11 a/b/g/n

The purchase price $749+tax which was more then B&H at $699 but not being open Friday nights, B&H it’s your loss. There is also a P6320 model with AMD Phenom II X4 820 2.80GHz processor and NVIDIA GeForce 9100 Graphics for the same price, it was a tough decision.

I’m not trilled with the HP part having not enjoyed experiences with HP servers and Compaq desktops, however time will tell.

How to find MySQL developers?

Wednesday, March 24th, 2010

Brian wrote recently Where did all of the MySQL Developers Go?, while over in Drizzle land they have been accepted for the Google Summer of code along with many other open source projects. MySQL from my observation a noticeable absentee.

Historically, the lack of opportunity to enable community contributions and see them implemented in say under 5 years, has really hurt MySQL in recent times. There is plenty of history here so that’s not worth repeating. The current landscape of patches, forks and custom MySQL binaries for storage engine provider has provided a boom of innovation that sadly is now lost from the core MySQL product.

In Drizzle, community contribution is actively sought and a good portion of committed code is not from the core Drizzle developers (wherever they work). As a Drizzle GSoC project contributor last year Padraig for example this year is helping to mentor. The Drizzle project contribution philisophy, GSoC and other activities such as the Drizzle Developer Day all enable the next generation of developers to be part of ongoing project developement.

Oracle, what are you going to do to foster an active community and new long term developers for MySQL?

Understanding Drizzle user authentication options – Part 2

Friday, March 12th, 2010

A key differentiator in Drizzle from it’s original MySQL roots is user based authentication. Gone is the host/user and schema/table/column model that was stored in the MyISAM based mysql.user table.

Authentication is now completely pluggable, leveraging existing systems such as PAM, LDAP via PAM and Http authentication.

In this post I’ll talk about HTTP authentication which requires an external http server to implement successfully. You can look at Part 1 for PAM authentication.

Compiling for http auth support

By default during compilation you may find.

checking for libcurl... no
configure: WARNING: libcurl development lib not found: not building auth_http plugin. On Debian this is found in libcurl4-gnutls-dev. On RedHat it's in libcurl-devel.

In my case I needed:

$ sudo yum install curl-devel

NOTE: Bug #527255 talks about issues of the message being incorrect for libcurl-devel however this appears it may be valid in Fedora Installs

After successfully installing the necessary pre-requisite you should see.

checking for libcurl... yes
checking how to link with libcurl... -lcurl
checking if libcurl has CURLOPT_USERNAME... no

HTTP Authentication

We need to enable the plugin at server startup.

$ sbin/drizzled --mysql-protocol-port=3399 --plugin_add=auth_http &

You need to ensure the auth_http plugin is active by checking the data dictionary plugin table.

drizzle> select * from data_dictionary.plugins where plugin_name='auth_http';
+-------------+----------------+-----------+-------------+
| PLUGIN_NAME | PLUGIN_TYPE    | IS_ACTIVE | MODULE_NAME |
+-------------+----------------+-----------+-------------+
| auth_http   | Authentication | TRUE      |             |
+-------------+----------------+-----------+-------------+

The auth_http plugin also has the following system variables.

drizzle> SHOW GLOBAL VARIABLES LIKE '%http%';
+------------------+-------------------+
| Variable_name    | Value             |
+------------------+-------------------+
| auth_http_enable | OFF               |
| auth_http_url    | http://localhost/ |
+------------------+-------------------+
2 rows in set (0 sec)

In order to configure Http authentication, you need to have the following settings added to your drizzled.cnf file. For example:

$ cat etc/drizzled.cnf
[drizzled]
auth_http_enable=TRUE
auth_http_url=http://thedrizzler.com/auth

NOTE: Replace the domain name with something you have, even localhost.

A Drizzle restart gives us

$ bin/drizzle -e "SHOW GLOBAL VARIABLES LIKE 'auth_http%'"
+------------------+-----------------------------+
| Variable_name    | Value                       |
+------------------+-----------------------------+
| auth_http_enable | ON                          |
| auth_http_url    | http://thedrizzler.com/auth |
+------------------+-----------------------------+

By default, currently if the settings result in an invalid url, then account validation does not fail and you can still login. It is recommended that you always configure pam authentication as well as a fall back.

$ wget -O tmp http://thedrizzler.com/auth
--17:32:32--  http://thedrizzler.com/auth
Resolving thedrizzler.com... 208.43.73.220
Connecting to thedrizzler.com|208.43.73.220|:80... connected.
HTTP request sent, awaiting response... 404 Not Found
17:32:32 ERROR 404: Not Found.

$ bin/drizzle
drizzle > exit

Configuring passwords

To correctly configured your web server to perform the HTTP auth, you can use this Apache syntax as an example.

The following is added to the VirtualHost entry in your web browser.

<Directory /var/www/drizzle/auth>
AllowOverride FileInfo All AuthConfig
AuthType Basic
AuthName "Drizzle Access Only"
AuthUserFile /home/drizzle/.authentication
Require valid-user
</Directory>
$ sudo su -
$ mkdir /var/www/drizzle/auth
$ touch /var/www/drizzle/auth/index.htm
$ apachectl graceful

We check we now need permissions for the URL.

$ wget -O tmp http://thedrizzler.com/auth
--17:35:48--  http://thedrizzler.com/auth
Resolving thedrizzler.com... 208.43.73.220
Connecting to thedrizzler.com|208.43.73.220|:80... connected.
HTTP request sent, awaiting response... 401 Authorization Required
Authorization failed.

You need to create the username/password for access.

$ htpasswd -cb /home/drizzle/.authentication testuser sakila
$ cat /home/drizzle/.authentication
testuser:85/7CbdeVql4E

Confirm that the http auth with correct user/password works.

$ wget -O tmp http://thedrizzler.com/auth --user=testuser --password=sakila
--17:37:45--  http://thedrizzler.com/auth
Resolving thedrizzler.com... 208.43.73.220
Connecting to thedrizzler.com|208.43.73.220|:80... connected.
HTTP request sent, awaiting response... 301 Moved Permanently

Drizzle HTTP Authentication in action

By default we now can’t login

$ bin/drizzle
ERROR 1045 (28000): Access denied for user ''@'127.0.0.1' (using password: NO)
$ bin/drizzle --user=testuser --password=sakila999
ERROR 1045 (28000): Access denied for user 'testuser'@'127.0.0.1' (using password: YES)

$ bin/drizzle --user=testuser --password=sakila
Welcome to the Drizzle client..  Commands end with ; or \g.
Your Drizzle connection id is 6
Server version: 7 Source distribution (trunk)

Type 'help;' or '\h' for help. Type '\c' to clear the buffer.

drizzle>

Understanding Drizzle user authentication options – Part 1

Friday, March 12th, 2010

A key differentiator in Drizzle from it’s original MySQL roots is user based authentication. Gone is the host/user and schema/table/column model that was stored in the MyISAM based mysql.user table.

Authentication is now completely pluggable, leveraging existing systems such as PAM, LDAP via PAM and Http authentication.

In this post I’ll talk about PAM authentication which is effectively your current Linux based user security.

This information is based on the current build 1317.

Compiling for PAM support

Your Drizzle environment needs to be compiled with PAM support. You would have received the following warning during a configure.

$ ./configure
...
checking for libpam... no
configure: WARNING: Couldn't find PAM development support, pam_auth will not be built. On Debian, libpam is in libpam0g-dev. On RedHat it's in pam-devel.

The solution is provided in the warning message which is another great thing about Drizzle. The pre checks for dependencies and the optional messages like these far exceed the MySQL equivalent compilation process. In my case:

$ sudo yum install pam-devel

When correctly configured, it should look like:

checking for libpam... yes
checking how to link with libpam... -lpam

Working with PAM

You need to enable the PAM authentication plugin at drizzled startup.

sbin/drizzled --plugin_add=auth_pam &

Unfortunately connecting fails to work with

time sbin/drizzle --user=testuser --password=***** --port=4427
real 0m0.003s
user 0m0.003s
sys 0m0.001s

A look into the source at src/drizzle-2010.03.1317/plugin/auth_pam/auth_pam.cc shows a needed config file

117     retval= pam_start("check_user", userinfo.name, &conv_info, &pamh);

Configuring PAM

In order to enable PAM with Drizzle you need to have the following system configuration.

$ cat /etc/pam.d/check_user
auth    required        pam_unix.so
account required        pam_unix.so

$ time sbin/drizzle --user=testuser --password=***** --port=4427
ERROR 1045 (28000): Access denied for user 'testuser'@'127.0.0.1' (using password: YES)

real 0m2.055s
user 0m0.002s
sys 0m0.002s

This did some validation but still failed.

It seems Bug #484069 may fix this problem, however this is not currently in the main line!

Stay Tuned!

Gearman examples under Mac OS X

Friday, March 12th, 2010

Today I listened in on the O’Reilly webcast Introduction to Gearman by Eric Day of Rackspace. I thought I would follow through on the machine at hand; a Mac with OS X 10.5, however I again got caught up with the gearman PHP extension integration. A look at and older post Getting started with Gearman based on Ubuntu needed an update for Mac.

First I downloaded and installed the latest gearman. This was version 0.12 and includes libgearman 0.7.
You should always check for any more recent updates.

wget http://launchpad.net/gearmand/trunk/0.12/+download/gearmand-0.12.tar.gz
tar xvfz gearmand-0.12.tar.gz
cd gearmand-0.12
./configure
make
sudo make install
ls -l /usr/local/lib/libg*
#-rwxr-xr-x  1 root  wheel  79808 Mar 12 13:33 /usr/local/lib/libgearman.4.dylib
#lrwxr-xr-x  1 root  wheel     18 Mar 12 13:33 /usr/local/lib/libgearman.dylib -> libgearman.4.dylib
#-rwxr-xr-x  1 root  wheel    960 Mar 12 13:33 /usr/local/lib/libgearman.la

gearmand was installed in /usr/local/sbin and gearman installed in /usr/local/bin

Next we needed the gearman PHP extension from pecl

wget http://pecl.php.net/get/gearman-0.7.0.tgz
tar xvfz gearman-0.7.0.tgz
cd gearman-0.7.0
phpize
./configure
make
sudo make install
# Installing shared extensions:     /usr/lib/php/extensions/no-debug-non-zts-20060613/

Take note of the extension location, as I needed this for the next step.

Php was already installed, which was good.

$ which php
/usr/bin/php

However I found no configuration loaded.

$ php --info | grep -i configuration
Configuration File (php.ini) Path => /etc
Loaded Configuration File => (none)
Configuration

What exists is a default example only. In order to include the gearman extension I needed to do the following.

$ sudo cp /etc/php.ini.default /etc/php.ini
$ sudo vi /etc/php.ini

# Set extension directory
extension_dir = "/usr/lib/php/extensions/no-debug-non-zts-20060613/"
# Add Gearman extension
extension="gearman.so"

And a confirmation.

$ php --info | egrep -i "(configuration|gearman)"
Configuration File (php.ini) Path => /etc
Loaded Configuration File => /private/etc/php.ini
Configuration
gearman
gearman support => enabled
libgearman version => 0.12

Ready now to try out the PHP examples.

Using ext4 for MySQL

Friday, March 12th, 2010

This week with a client I saw ext4 used for the first time on a production MySQL system which was running Ubuntu 9.10 (Karmic Koala). I observe today while installing 9.10 Server locally that ext4 is the default option. The ext4 filesystem is described as better performance, reliability and features while there is also information about improvements in journaling.

At OSCON 2009 I attended a presentation on Linux Filesystem Performance for Databases by Selena Deckelmann in which ext4 was included. While providing some improvements in sequential reading and writing, there were issue with random I/O which is the key for RDBMS products.

Is the RAID configuration (e.g. RAID 5, RAID 10), strip size, buffer caches, LVM etc more important then upgrading from ext3 to ext4? I don’t have access to any test equipment in order to determine myself however I’d like to know of any experiences from members of the MySQL community and if anybody has experienced any general problems running ext4.

ext4 References

Drizzle’s Data Dictionary and Global Status

Thursday, March 11th, 2010

With the recent news by Brian about the Data Dictionary in Drizzle replacing the INFORMATION_SCHEMA, I was looking into the server status variables (aka INFORMATION_SCHEMA.GLOBAL_STATUS) and I came across an interesting discovery.

select * from data_dictionary.global_status;
...
| Table_locks_immediate      | 0              |
| Table_locks_waited         | 0              |
| Threads_connected          | 8134064        |
| Uptime                     | 332            |
| Uptime_since_flush_status  | 332            |
+----------------------------+----------------+
51 rows in set (0 sec)

This only retrieved 51 rows, which is way less then previous. What I wanted was clearly missing, all the old com_ status variables. Looking at what the data_dictionary actually has available revealed a new table.

drizzle> select * from data_dictionary.global_statements;
+-----------------------+----------------+
| VARIABLE_NAME         | VARIABLE_VALUE |
+-----------------------+----------------+
| admin_commands        | 0              |
| alter_db              | 0              |
| alter_table           | 0              |
| analyze               | 0              |
| begin                 | 0              |
| change_db             | 1              |
| check                 | 0              |
| checksum              | 0              |
| commit                | 0              |
| create_db             | 0              |
| create_index          | 0              |
| create_table          | 0              |
| delete                | 0              |
| drop_db               | 0              |
| drop_index            | 0              |
| drop_table            | 0              |
| empty_query           | 0              |
| flush                 | 0              |
| insert                | 0              |
| insert_select         | 0              |
| kill                  | 0              |
| load                  | 0              |
| release_savepoint     | 0              |
| rename_table          | 0              |
| replace               | 0              |
| replace_select        | 0              |
| rollback              | 0              |
| rollback_to_savepoint | 0              |
| savepoint             | 0              |
| select                | 10             |
| set_option            | 0              |
| show_create_db        | 0              |
| show_create_table     | 0              |
| show_errors           | 0              |
| show_warnings         | 0              |
| truncate              | 0              |
| unlock_tables         | 0              |
| update                | 0              |
+-----------------------+----------------+
38 rows in set (0 sec)

Kudos to this. Looking at list I saw an obvious omission, of “ping”. Something that caught me out some years ago with huge (300-500 per second admin_commands). I’m also a fan of Mark’s recent work An evening hack – Com_ping in MySQL.

Upgrading my Google G1 dev phone to Android 1.6

Thursday, March 11th, 2010

To update your Google G1 phone (mine is an Android developer unlocked phone) to Android 1.6 (Donut), I did the following.

  • Download and unpack the Android SDK for Mac OS X from http://developer.android.com/sdk/index.html
  • Download the Android 1.6 Radio and System Images from http://developer.htc.com/adp.html
  • Reboot phone with USB connected
  • Update the Device Radio Firmware
    • Confirm devices with $ adb devices This step drove me crazy because it would list no devices. It ended up being a faulty (and new) USB cable. When your phone is connected to USB, it will give you a notification, and usb icon on phone top menu.
    • Copy Radio image
    • Reboot in recovery mode and follow instructions
  • Download the fastboot for Mac OS X at http://developer.htc.com/adp.html
  • Flash the System Image Package to the Device as per instructions

The instructions say to reboot, but in my case it rebooted automatically after the fastboot update.

The problem after reboot was I was unable to sign in to google servers the first time. At G1 Dev Phone won’t connect to Google servers with valid SIM card I added the necessary AT&T/Cingular APN via details at http://modmyi.com/wiki/index.php/Carrier_APN_Settings.

I could then go Settings | Data synchronization and continue the Google registration process.